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    <title>Drug Discovery on AI Science Report</title>
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      <title>A Chip That Watches Single Proteins Change Shape Could Change How We Design Drugs</title>
      <link>https://aiscience.uk/posts/single-protein-conformational-dynamics-nanocavity-sensor/</link>
      <pubDate>Tue, 21 Jul 2026 00:00:00 +0800</pubDate>
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      <description>&lt;p&gt;Your body contains roughly 20,000 different kinds of proteins. Each one is a tiny machine that folds, twists, and flexes thousands of times per second to do its job: digesting food, firing neurons, fighting infections. When one of those machines jams or snaps into the wrong shape, you get disease. But for decades, watching a single protein change shape in real time has been like trying to film a hummingbird&amp;rsquo;s wings with a pinhole camera. The motions are too fast, the proteins are too small, and the measurement tools introduce too much noise.&lt;/p&gt;&#xA;&lt;p&gt;Researchers at the University of Queensland just solved that problem. In a paper posted to arXiv on July 17, they describe a silicon-chip sensor that can track the shape changes of a single protein molecule at sub-microsecond speeds, continuously, for minutes at a time. No fluorescent dyes, no averaging over millions of molecules, no physical tether that might alter the protein&amp;rsquo;s behavior. The device is a nanoscale stethoscope pressed up against a single molecule, and it&amp;rsquo;s revealing things about protein motion that nobody had seen before.&lt;/p&gt;</description>
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      <title>The AI That Learns From Three Experiments How to Find the Next Blockbuster Antibody</title>
      <link>https://aiscience.uk/posts/abicl-in-context-learning-antibody-affinity-ranking/</link>
      <pubDate>Thu, 09 Jul 2026 00:00:00 +0800</pubDate>
      <guid>https://aiscience.uk/posts/abicl-in-context-learning-antibody-affinity-ranking/</guid>
      <description>&lt;p&gt;In 2023, the world spent over $200 billion on antibody drugs — treatments like Keytruda for cancer and Humira for autoimmune disease. But finding a single antibody that binds well enough to become a drug is like searching for a specific grain of sand on a beach. A typical drug discovery campaign screens thousands of candidates, each one requiring expensive lab tests to measure how tightly it grabs its target. Most fail.&lt;/p&gt;</description>
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      <title>Enerzyme: The AI That Can Watch Enzymes Work</title>
      <link>https://aiscience.uk/posts/enerzyme-ai-enzyme-catalysis-neural-network-potentials/</link>
      <pubDate>Mon, 06 Jul 2026 00:00:00 +0800</pubDate>
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      <description>&lt;h1 id=&#34;enerzyme-the-ai-that-can-watch-enzymes-work&#34;&gt;Enerzyme: The AI That Can Watch Enzymes Work&lt;/h1&gt;&#xA;&lt;p&gt;Inside every living cell, enzymes are running the chemistry of life, snipping, splicing, and assembling molecules with a precision that industrial chemists can only dream of. A single enzyme can catalyze a million reactions per second. The problem? Understanding &lt;em&gt;how&lt;/em&gt; they do it has been painfully slow. Even with GPU-accelerated quantum chemistry, simulating a single step in an enzymatic reaction on a cluster of 300 atoms can take hours. Mapping a full reaction pathway takes days.&lt;/p&gt;&#xA;&lt;p&gt;Now researchers at MIT have built something that changes the math entirely.&lt;/p&gt;&#xA;&lt;p&gt;Heather Kulik&amp;rsquo;s group released &lt;strong&gt;Enerzyme&lt;/strong&gt;, an open-source framework that trains neural networks to simulate enzyme catalysis with near-quantum-chemical accuracy, but at a fraction of the cost. The key breakthrough isn&amp;rsquo;t a better algorithm. It&amp;rsquo;s that Enerzyme handles everything that makes enzymes uniquely hard to model: their size, their solvent environment, and the complex charge transfers that drive their chemistry.&lt;/p&gt;</description>
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